ABI Knowledge Base

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How to delete spaces from file names on Unix systems using Shell

for f in *; do mv "$f" `echo $f | tr ' ' '_'`; done

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How to get your IP addresses on Unix systems

ifconfig | awk '/inet/'

And on Microsoft Windows

ipconfig

If you need to know your public IP address, please visit [[http://ifconfig.bsd.am|ifconfig.bsd.am]]

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If your internet connection is slow at the office, do the following tests:

* Copy a large file (more than 100MB) from one of the local servers to you. If the copy speed is low, then there’s an issue with the WiFi. Try reconnecting, it might help. 
  * If the copy speed is slow, do a speed test using Speedtest.net. If the speed is high (more than 250Mbps) then there are no issues connecting to Armenian networks. 
  * Try doing a speed test using https://librespeed.org/ , make sure you use a Western European server such as Amsterdam or Frankfurt, if the speed is low, then there’s an issue at IIAP.

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List Slurm jobs with pretty formatting

<code>
$ squeue  -o "%.9i %.9P %.24j %.8u %.3t %.16M %.6D %.19R %.4C %.10m"
    JOBID PARTITION                     NAME     USER  ST             TIME  NODES    NODELIST(REASON) CPUS MIN_MEMORY
     6070    comp0a                     gatk     nate   R      22-23:37:18      1               comp0    4        12G
     6071    comp0a                     gatk     nate   R      22-23:37:05      1               comp0    4        12G
     6072    comp0a                     gatk     nate   R      22-23:35:49      1               comp0    4        12G
     6073    comp0a                     gatk     nate   R      22-23:35:46      1               comp0    4        12G
     6074    comp0a                     gatk     nate   R      22-23:35:43      1               comp0    4        12G
     6075    comp0a                     gatk     nate   R      22-23:35:40      1               comp0    4        12G
     6178    comp0a                computel2    davit   R       9-22:25:52      1               comp0   40        75G
     6268    comp0a                  vc_d.sh    smbat   R       1-19:44:22      1               comp0    4        50G
     6275    comp0a           qc_fecal_cfdna    mherk   R          2:40:11      1               comp0   20        30G
</code>

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