ABI Knowledge Base

Welcome to the Armenian Bioinformatics Institute Knowledge Base – the central hub for documentation, guides, and reference material for researchers and staff.

Whether you are new to ABI or an experienced user, these sections will help you find what you need.

• Getting Started – New member onboarding, account setup, SSH access, and cluster basics.
• Software – Installed software, how to use tools, conda environments, and programming languages.
• Slurm Job Scheduler – How to submit, monitor, and manage compute jobs.
• Databases & Reference Data – Reference genomes, indexes, and shared datasets on the server.
• Pipelines – End-to-end bioinformatics workflows (QC, alignment, variant calling, etc.).
• Scripts – Reusable scripts for common bioinformatics tasks.
• Projects – Documentation for ongoing research projects at ABI.

• Infrastructure – Servers, network, LDAP, monitoring, and automation.
• Changelog – Recent infrastructure changes, maintenance, and updates.
• Admin Tips & Tricks – Quick admin commands and troubleshooting.

• Support & Contact – How to get help, report issues, and request software.
• How to Edit This Wiki – Learn how to contribute to this knowledge base.

The Armenian Bioinformatics Institute (ABI) is a research institute focused on the development and application of computational data analysis methods to human, plant, and bacterial genomics.

If you have any questions, please contact the IT Team at it-support@abi.am.