====== ABI Knowledge Base ======

Welcome to the **Armenian Bioinformatics Institute** Knowledge Base -- the central hub for documentation, guides, and reference material for researchers and staff.

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===== Quick Links =====

|  **[[getting_started:new_member|New Member? Start Here]]**  |  **[[software:slurm|Submit a Job (Slurm)]]**  |  **[[support|Get Support]]**  |
|  **[[getting_started:cluster_basics|Cluster Basics]]**  |  **[[software:start|Available Software]]**  |  **[[databases:start|Databases & Reference Genomes]]**  |

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===== For Researchers =====

Whether you are new to ABI or an experienced user, these sections will help you find what you need.

  * **[[getting_started:start|Getting Started]]** -- New member onboarding, account setup, SSH access, and cluster basics.
  * **[[software:start|Software]]** -- Installed software, how to use tools, conda environments, and programming languages.
  * **[[software:slurm|Slurm Job Scheduler]]** -- How to submit, monitor, and manage compute jobs.
  * **[[databases:start|Databases & Reference Data]]** -- Reference genomes, indexes, and shared datasets on the server.
  * **[[pipelines:start|Pipelines]]** -- End-to-end bioinformatics workflows (QC, alignment, variant calling, etc.).
  * **[[scripts:start|Scripts]]** -- Reusable scripts for common bioinformatics tasks.
  * **[[projects:start|Projects]]** -- Documentation for ongoing research projects at ABI.

===== For IT & System Administrators =====

  * **[[infra:start|Infrastructure]]** -- Servers, network, LDAP, monitoring, and automation.
  * **[[infra:changelog|Changelog]]** -- Recent infrastructure changes, maintenance, and updates.
  * **[[infra:tips_and_tricks|Admin Tips & Tricks]]** -- Quick admin commands and troubleshooting.

===== Support & Contributing =====

  * **[[support|Support & Contact]]** -- How to get help, report issues, and request software.
  * **[[getting_started:wiki_editing|How to Edit This Wiki]]** -- Learn how to contribute to this knowledge base.

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===== About ABI =====

The Armenian Bioinformatics Institute (ABI) is a research institute focused on the development and application of computational data analysis methods to human, plant, and bacterial genomics.

If you have any questions, please contact the IT Team at **[[mailto:it-support@abi.am|it-support@abi.am]]**.